PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.013G040600.4
Common NameB456_013G040600
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family G2-like
Protein Properties Length: 292aa    MW: 32742.8 Da    PI: 5.9976
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.013G040600.4genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like36.21.4e-11260284125
             G2-like   1 kprlrWtpeLHerFveaveqLGGse 25 
                         k+r++W+peLH+rFv+a++qLGGs+
  Gorai.013G040600.4 260 KQRRCWSPELHRRFVNALQQLGGSQ 284
                         79*********************86 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.609.4E-9259284IPR009057Homeodomain-like
TIGRFAMsTIGR015571.3E-7260282IPR006447Myb domain, plants
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 292 aa     Download sequence    Send to blast
MGLVPPELSL DFRPNFVPKT ITNFLREVSL IGNVSDKVSK LDTFVKGLEE EMKKIDAFKR  60
ELPLCMLLLN DAILVLKEES TQCMARNVEP VLEEFIPLKN KEEDNHSEED GSLITTKKEE  120
DCNNDCNNNM DKKNWMSSVQ LWNIDDDYCS SDHKLDTKRN DEDPCKSRGG GGRGFMPFKA  180
NLGFAVRKEE KQEIPVHGLT LSTPGINNLK EESSSTGSRS SCSRAVPFSA TNARSSFQSA  240
PPVGPSNHLQ QHQQQQTGRK QRRCWSPELH RRFVNALQQL GGSQGEEQMA T*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012464423.10.0PREDICTED: uncharacterized protein LOC105783481
TrEMBLA0A0D2TUM60.0A0A0D2TUM6_G
STRINGVIT_03s0063g01060.t012e-98(Vitis vinifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37180.12e-18G2-like family protein
Publications ? help Back to Top
  1. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]